CDS

Accession Number TCMCG081C12543
gbkey CDS
Protein Id XP_002275930.1
Location complement(join(3884505..3884767,3884965..3885094,3885386..3885485,3885610..3885689,3886017..3886154,3886231..3886520,3886953..3887115,3887252..3887353,3887463..3887665,3887738..3887916,3888026..3888117,3888981..3889110,3889189..3889736,3890140..3890319,3890707..3890790,3890917..3890985,3891126..3891200,3891288..3891341,3891435..3891537,3891918..3892014,3892554..3893367))
Gene LOC100255608
GeneID 100255608
Organism Vitis vinifera

Protein

Length 1297aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA33471
db_source XM_002275894.3
Definition PREDICTED: DNA mismatch repair protein MSH6 [Vitis vinifera]

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC -
KEGG_Module M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08737        [VIEW IN KEGG]
EC -
KEGG_Pathway ko01524        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05210        [VIEW IN KEGG]
map01524        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05210        [VIEW IN KEGG]
GOs GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006290        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCTCCAACACGTCGTATGAGCAATGGAAGATCGCCACTGGTGAACCAGCAAAGCCAAATTACAGCGTTCTTCTCCAAAACTTCATCTTCTCCTTCTCCTTCGCCTGTTCTCTCCAAACAGGACCTTAACCCTAAACCTAGCCCTAGCCCTAGCCCCAGCCCTAGTCCGACGACTCCTTCACCTGTGCAAGCCAAGCTTAGAAAGCCGCTCTTAGTGATCGGCCCATCTAAGACCACTTCTCCTTCAACGCCGGTTACGGGAAGCAAATCGTACGGAGAGGAGGTTGTGAACAGGAGAGTCAAGGTTTACTGGCCGTTGGATAAGAGCTGGTACGTGGGTTGCGTGAAATCGTTCGATGAGCTAACCGGCGAGCATTTGGTTCAGTACGATGATGCCGATGAGGAGACTCTTGATCTTGGTAAGGAGAAGATCGAGTGGGTGGAGGATAAAGGCAGAAGCCTTCGTCGATTGCGTCGGGGTTCGGTTTTTGAGAAGGGGGTGGTTCCCGTCGGGGAAGCCAATGTGGAGGAGGAGAGTGGTGGTGATGATTCGAGTGATGAAGATTGGGGAAAGGGTAAGGGAAGGGAGGAGGTTGAAGATGATTCGGAAGATGTTGAATTTGAGGAAGAGGAGGATGAAGAAGAGGAAGTTGAGGGCCCCAAAAAAGGGCAAAGTAAGAAGGTTGATCCGAAGAAGCGGAAGGCGGTTGGAGAAGGAACAATGGGTTCTGGTAAGAGGAGAAAGAGCAGTGGAGGAGCGGAGAAGAATACATTTAAAGTTTCCTCAGTAGAGCCTATGAAGAATGCTGAGAGCAGGAAGGCTTCAGACATCCTTGACAATGTCCTACCAGGCGATGCCTTAGAAAGATTTGGTGCACGTGAAGCAGAGAAGTTGCCCTTCCTTGGGGGAGAACGCAAGGATGCTAAAAGAAGATGTCCTGGAGATGCAAATTATGATCCAAGAACTCTTTACTTGCCTCCTAATTTTTTAAAGAATTTAACAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAGGCATATGGACAAGGTTATTTTTTTCAAGATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAGGGGGGACAACCTCATTGTGGATTTCCAGAAAAAAACTTCTCAATAAATGTTGAGAAATTGGCTAGAAAGGGTTATCGTGTTCTTGTTGTAGAGCAAACAGAAACACCTGAGCAGCTTGAGCTTCGTCGCAAAGAGAAGGGTTCTAAGGACAAGGTTGTGAAACGTGAAATATGTGCAGTGGTCACAAAGGGAACACTAACTGAAGGCGAGATGCTATCAGCCAACCCTGATGCTTCTTACCTTATGGCAGTAACTGAAAGCTGTCAGTTTGAAGAACGCAGTTTTGGTGTTTGTGTAGTTGATGTTGCTACAAGCAGGATTATTCTTGGACAGTTCAGGGATGATTCAGAGTGCAGCACCCTGTGTTGTCTATTATCTGAGCTAAGGCCTGTAGAGATTATAAAACCAGCTAACCTTCTCAGTCCTGAAACTGAGAGAGCACTGATGAGACATACAAGAAGCCCTTTAGTAAATGAACTGGTTCCAATCTCAGAATTCTGGGACTCTAAGAAAACTGTTTCTGAAATCAGGAGTGTCTACAGATGTTTCAATGATCTATCAGTTTCTGGATCTTTAAATGAAGCAAATTTGAGTGTTAAGGGTTCTTTTGTTGAAGAAGATCCCTTGGGCCTACCTGACATTTTGTCCAAGTTGGTGAATGCAGGCGAGAGTGGCAGCCTTGCACTTTCAGCCCTTGGGGGCACTCTTTTCTATCTAAAGCAGGCTTTTATGGATGAAACATTGCTTAGATTTGCTAAGTTTGAGTTATTTCCATACTCTGGTGTTAGTGATATCTTTCATAAGCCATACATGGTTCTTGATGCTGCTGCCCTGGAGAACCTTGAGATTTTTGAGAACAGTAGAAAAGGAGACTCATCAGGGACTCTCTATGCACAACTAAATCACTGTGTGACTGCATTTGGTAAGAGGTTGCTGAAGACATGGCTTGCAAGACCTTTATACCATTTGGATTCAATTAGGGAACGCCAGGATGCTGTGGCAGGTCTGAGGGGAGTTAATCTACCTTCTGCACTTGAATTTCGAAAAGAGTTGTCTAGGCTTCCAGACATGGAGCGGTTGCTTGCACGTATCTTTGCTAGCAGTGAAGCTAATGGAAGGAATGCAAACAAGGTAGTTTTCTATGAGGATGCGGCAAAGAAACAGCTCCAGGAGTTTATATCAGCTCTACGTGGATGTGAATTAATGACACAAGCATGCTCTTCTCTTGGTGTCATTTTGGAAAATGTTGAATCTGGACTACTACATCATTTATTAACACCTGGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGGAGTTGATAAGGAGTATGACTCTGCCTGTAAAACAGTCAAGGAGATTGAATTAAGGTTGAAAAAGCACTTAAAGGAGCAGCAGAAATTACTTGGAGATGCATCAATAAATTTTGTAACAATTGGAAAAGAAGCATACCTTTTAGAAGTGCCAGAAAGTTTGCGGGGGAATATTCCTCGGGATTATGAATTACGATCATCCAAAAAGGGATTCTTCCGGTACTGGACTCCAAACATTAAGAAGTTCTTAGGAGAGCTCTCACATGCTGAATCAGAAAAGGAGTCTAAGTTGAGAAGCATTTTACAAAGGTTGATCAGTCGTTTCTGTGAACATCATGATAAGTGGAGACAGTTGGTTTCTTCAACTGCAGAACTGGATGTATTGATCAGTTTAGCAATCGCAAATGACTACTATGAAGGACCAACATGCCGGCCAGTGATCTCAGGGTTATCCAATTCAAATGAAGTGCCATGCTTTACTGCAAAAAGTTTAGGACATCCTGTTCTTAGGAGTGATTCTTTAGGGAAGGGTACATTTGTCCCCAATGACATTACTATTGGTGGTTCTGATCATGCCTGCTTTATCCTTCTCACTGGTCCAAACATGGGTGGAAAATCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTTATTTTGGCCCAGGTGGGAGCTGATGTGCCTGCAGAAAGCTTTGAGCTTTCACCTGTGGACCGCATCTTTGTTAGGATGGGTGCAAAAGATAATATTATGGCTGGCCAAAGTACATTTTTAACAGAGCTTTCTGAAACTGCATCTATGCTGACATCAGCAACCTGCAATTCACTGGTGGCACTGGATGAACTTGGACGTGGGACATCAACGTCAGATGGACAAGCAATTGCGGAATCAGTTCTTGAACATTTTGTTCATAAGGTGCGGTGTCGAGGAATGTTTTCTACTCACTATCACCGATTAGCAGTAGACTACAAAAAAAATTCCAAGGTCTCCCTATGCCATATGGCATGTCAAGTCGGAAAGGGAGTTGGAGGCGTGGAGGAAGTAACTTTTCTTTACAGGTTGAGGCCTGGTGCATGCCCTAAAAGCTATGGCGTCAATGTTGCACGGCTAGCTGGACTTCCTAACTCTGTACTTCAAAAGGCTGCTGCTAAGTCAAGAGAGATTGAGGGCATATATGGTAGGCACAGGAAGGGATCTGATGATGGATGTGATGAAAGATTATCATCCCAAAATTCAGAAGATGATGTGGTATTCTTCATCCAAAGCTTGATTAACGGTGTAGCAAAATTGAGTTACCACAAGTCTTTCAAGGACATACATGCTTCTTCGCTGAGTGACCTTCAGCAGAGAGCAAGAATATTTCTTGATCAGAATTAA
Protein:  
MAPTRRMSNGRSPLVNQQSQITAFFSKTSSSPSPSPVLSKQDLNPKPSPSPSPSPSPTTPSPVQAKLRKPLLVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKSWYVGCVKSFDELTGEHLVQYDDADEETLDLGKEKIEWVEDKGRSLRRLRRGSVFEKGVVPVGEANVEEESGGDDSSDEDWGKGKGREEVEDDSEDVEFEEEEDEEEEVEGPKKGQSKKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDNVLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKSRHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPHCGFPEKNFSINVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVTESCQFEERSFGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRPVEIIKPANLLSPETERALMRHTRSPLVNELVPISEFWDSKKTVSEIRSVYRCFNDLSVSGSLNEANLSVKGSFVEEDPLGLPDILSKLVNAGESGSLALSALGGTLFYLKQAFMDETLLRFAKFELFPYSGVSDIFHKPYMVLDAAALENLEIFENSRKGDSSGTLYAQLNHCVTAFGKRLLKTWLARPLYHLDSIRERQDAVAGLRGVNLPSALEFRKELSRLPDMERLLARIFASSEANGRNANKVVFYEDAAKKQLQEFISALRGCELMTQACSSLGVILENVESGLLHHLLTPGKGLPDIHSVINHFKEAFDWVEANNSGRIIPHEGVDKEYDSACKTVKEIELRLKKHLKEQQKLLGDASINFVTIGKEAYLLEVPESLRGNIPRDYELRSSKKGFFRYWTPNIKKFLGELSHAESEKESKLRSILQRLISRFCEHHDKWRQLVSSTAELDVLISLAIANDYYEGPTCRPVISGLSNSNEVPCFTAKSLGHPVLRSDSLGKGTFVPNDITIGGSDHACFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLTSATCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVRCRGMFSTHYHRLAVDYKKNSKVSLCHMACQVGKGVGGVEEVTFLYRLRPGACPKSYGVNVARLAGLPNSVLQKAAAKSREIEGIYGRHRKGSDDGCDERLSSQNSEDDVVFFIQSLINGVAKLSYHKSFKDIHASSLSDLQQRARIFLDQN